HL_5APN_078
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UGUAAAA
- Length
- 7 nucleotides
- Bulged bases
- 5APN|1|5|U|689, 5APN|1|5|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APN_078 not in the Motif Atlas
- Geometric match to HL_5J7L_151
- Geometric discrepancy: 0.2381
- The information below is about HL_5J7L_151
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80922.2
- Basepair signature
- cWW-tSH-F
- Number of instances in this motif group
- 3
Unit IDs
5APN|1|5|U|687
5APN|1|5|G|688
5APN|1|5|U|689
5APN|1|5|A|690
5APN|1|5|A|691
5APN|1|5|A|692
5APN|1|5|A|693
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain Y
- 60S ribosomal protein L26-A
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