HL_5APO_014

3D structure

PDB id

5APO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.41 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

5APO|1|5|C|648||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APO_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1005

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5APO|1|5|U|640||||P_1
5APO|1|5|C|641||||P_1
5APO|1|5|U|642||||P_1
5APO|1|5|U|643||||P_1
5APO|1|5|G|644||||P_1
5APO|1|5|A|645||||P_1
5APO|1|5|A|646||||P_1
5APO|1|5|A|647||||P_1
5APO|1|5|C|648||||P_1
5APO|1|5|A|649||||P_1

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain a

60S ribosomal protein L28

Chain e

60S ribosomal protein L32