HL_5APO_021
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 5APO|1|5|A|913||||P_1, 5APO|1|5|G|916||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APO_021 not in the Motif Atlas
- Homologous match to HL_5TBW_021
- Geometric discrepancy: 0.0833
- The information below is about HL_5TBW_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5APO|1|5|G|910||||P_1
5APO|1|5|C|911||||P_1
5APO|1|5|G|912||||P_1
5APO|1|5|A|913||||P_1
5APO|1|5|A|914||||P_1
5APO|1|5|A|915||||P_1
5APO|1|5|G|916||||P_1
5APO|1|5|A|917||||P_1
5APO|1|5|C|918||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
- Chain y
- CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
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