HL_5APO_029
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 5APO|1|5|G|1354||||P_1, 5APO|1|5|U|1356||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APO_029 not in the Motif Atlas
- Homologous match to HL_8P9A_141
- Geometric discrepancy: 0.5204
- The information below is about HL_8P9A_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_29762.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5APO|1|5|U|1347||||P_1
5APO|1|5|U|1348||||P_1
5APO|1|5|G|1349||||P_1
5APO|1|5|A|1350||||P_1
5APO|1|5|U|1351||||P_1
5APO|1|5|A|1352||||P_1
5APO|1|5|U|1353||||P_1
5APO|1|5|G|1354||||P_1
5APO|1|5|A|1355||||P_1
5APO|1|5|U|1356||||P_1
5APO|1|5|G|1357||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- 60S ribosomal protein L32
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