3D structure

PDB id
5APO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.41 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
5APO|1|5|G|1507||||P_1, 5APO|1|5|U|1511||||P_1
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5APO_032 not in the Motif Atlas
Homologous match to HL_8C3A_032
Geometric discrepancy: 0.1157
The information below is about HL_8C3A_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

5APO|1|5|A|1506||||P_1
5APO|1|5|G|1507||||P_1
5APO|1|5|C|1508||||P_1
5APO|1|5|A|1509||||P_1
5APO|1|5|G|1510||||P_1
5APO|1|5|U|1511||||P_1
5APO|1|5|U|1512||||P_1

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain P
60S ribosomal protein L17-A
Chain R
60S ribosomal protein L19-A
Chain l
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1007 s