HL_8C3A_032

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8C3A|1|1|G|1503, 8C3A|1|1|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8C3A|1|1|A|1502
8C3A|1|1|G|1503
8C3A|1|1|C|1504
8C3A|1|1|A|1505
8C3A|1|1|G|1506
8C3A|1|1|U|1507
8C3A|1|1|U|1508

Current chains

Chain 1

25S

Nearby chains

Chain x

Ribosomal protein L22

Chain z

60S ribosomal protein L19-A