HL_5APO_074

3D structure

PDB id

5APO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.41 Å

Loop

Sequence

UGAAUUGCAGAAUUCCGUGAA

Length

21 nucleotides

Bulged bases

5APO|1|8|C|83||||P_1, 5APO|1|8|C|84||||P_1, 5APO|1|8|U|86||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APO_074 not in the Motif Atlas

Homologous match to HL_8C3A_230

Geometric discrepancy: 0.571

The information below is about HL_8C3A_230

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08513.2

Basepair signature

cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5APO|1|8|U|69||||P_1
5APO|1|8|G|70||||P_1
5APO|1|8|A|71||||P_1
5APO|1|8|A|72||||P_1
5APO|1|8|U|73||||P_1
5APO|1|8|U|74||||P_1
5APO|1|8|G|75||||P_1
5APO|1|8|C|76||||P_1
5APO|1|8|A|77||||P_1
5APO|1|8|G|78||||P_1
5APO|1|8|A|79||||P_1
5APO|1|8|A|80||||P_1
5APO|1|8|U|81||||P_1
5APO|1|8|U|82||||P_1
5APO|1|8|C|83||||P_1
5APO|1|8|C|84||||P_1
5APO|1|8|G|85||||P_1
5APO|1|8|U|86||||P_1
5APO|1|8|G|87||||P_1
5APO|1|8|A|88||||P_1
5APO|1|8|A|89||||P_1

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain Y

60S ribosomal protein L26-A

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L39

Chain x

Probable metalloprotease ARX1