3D structure

PDB id
5AXM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)
Experimental method
X-RAY DIFFRACTION
Resolution
2.21 Å

Loop

Sequence
CAGUUGGGAG
Length
10 nucleotides
Bulged bases
5AXM|1|P|U|16||||2_555, 5AXM|1|P|U|17||||2_555, 5AXM|1|P|G|18||||2_555
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61092.1
Basepair signature
cWW-cWS-R-R-R
Number of instances in this motif group
8

Unit IDs

5AXM|1|P|C|13||||2_555
5AXM|1|P|A|14||||2_555
5AXM|1|P|G|15||||2_555
5AXM|1|P|U|16||||2_555
5AXM|1|P|U|17||||2_555
5AXM|1|P|G|18||||2_555
5AXM|1|P|G|19||||2_555
5AXM|1|P|G|20||||2_555
5AXM|1|P|A|21||||2_555
5AXM|1|P|G|22||||2_555

Current chains

Chain P
RNA (75-MER)

Nearby chains

Chain B
tRNA(His)-5'-guanylyltransferase (Thg1) like protein

Coloring options:

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