Motif HL_61092.1 Version HL_61092.1 of this group appears in releases 3.12 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2AZX_007 | 2AZX | 0.4183 | 2 | D | 72-MER | C | 513||||6_555 | A | 514||||6_555 | A | 515||||6_555 | G | 519||||6_555 | U | 520||||6_555 | A | 521||||6_555 | G | 522||||6_555 | cWW | cWS | ||
| 2 | HL_2AZX_004 | 2AZX | 0.4183 | 2 | tRNA D-loop | D | 72-MER | C | 513 | A | 514 | A | 515 | G | 519 | U | 520 | A | 521 | G | 522 | cWW | cWS | |
| 3 | HL_4MGN_002 | 4MGN | 0.4589 | 2 | B | tRNA-glycine | C | 13 | A | 14 | G | 15 | G | 18 | U | 19 | A | 20 | G | 21 | cWW | ncWS | cSH | |
| 4 | HL_6CU1_003 | 6CU1 | 0.3466 | 2 | A | Y RNA-like | C | 58 | A | 59 | A | 60 | G | 63 | U | 64 | A | 65 | G | 66 | cWW | cWS | cSH | |
| 5 | HL_5AXM_004 | 5AXM | 0.0000 | 3 | P | tRNA | C | 13||||2_555 | A | 14||||2_555 | G | 15||||2_555 | G | 19||||2_555 | G | 20||||2_555 | A | 21||||2_555 | G | 22||||2_555 | cWW | ncWS | ||
| 6 | HL_5AXM_001 | 5AXM | 0.0000 | 3 | tRNA D-loop | P | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | G | 20 | A | 21 | G | 22 | cWW | ncWS | |
| 7 | HL_4WJ4_004 | 4WJ4 | 0.2887 | 3 | B | tRNA | C | 13||||5_455 | A | 14||||5_455 | G | 15||||5_455 | G | 19||||5_455 | U | 20||||5_455 | A | 21||||5_455 | G | 22||||5_455 | cWW | ncSW | ||
| 8 | HL_4WJ4_001 | 4WJ4 | 0.2887 | 3 | B | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGGUAG | 3 |
| CAGUUGGGAG | 2 |
| CAGUCGGUAG | 2 |
| CAGUGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGGUA | 3 |
| AGUUGGGA | 2 |
| AGUCGGUA | 2 |
| AGUGGUA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- tRNA D-loop (2)
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.31 | Max 0.52
Coloring options: