HL_5BJO_001
3D structure
- PDB id
- 5BJO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Corn RNA aptamer in complex with DFHO, site-specific 5-iodo-U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.35 Å
Loop
- Sequence
- GAAGGAGG(IU)C
- Length
- 10 nucleotides
- Bulged bases
- 5BJO|1|E|A|11, 5BJO|1|E|A|14
- QA status
- Modified nucleotides: IU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- G-quadruplex fragment
- Broad Annotation
- No text annotation
- Motif group
- HL_57863.1
- Basepair signature
- cWW-F-F-cWH-cWH-F
- Number of instances in this motif group
- 2
Unit IDs
5BJO|1|E|G|9
5BJO|1|E|A|10
5BJO|1|E|A|11
5BJO|1|E|G|12
5BJO|1|E|G|13
5BJO|1|E|A|14
5BJO|1|E|G|15
5BJO|1|E|G|16
5BJO|1|E|IU|17
5BJO|1|E|C|18
Current chains
- Chain E
- RNA (36-MER)
Nearby chains
- Chain Y
- RNA (36-MER)
Coloring options: