Motif HL_57863.1 Version HL_57863.1 of this group appears in releases 3.88 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-6 | 4-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5BJO_001 | 5BJO | 0.0000 | 1 | G-quadruplex fragment | E | RNA (36-MER) | G | 9 | A | 10 | G | 12 | G | 13 | A | 14 | G | 15 | G | 16 | IU | 17 | C | 18 | cWW | cWH | cWH |
| 2 | HL_5BJO_002 | 5BJO | 0.6474 | 0 | G-quadruplex fragment | E | RNA (36-MER) | G | 20 | A | 21 | G | 22 | G | 23 | A | 24 | G | 25 | G | 26 | U | 27 | C | 28 | cWW | cWH | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGGAGGC | 1 |
| GAGGAGGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGGAGG(IU) | 1 |
| AGGAGGU | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- G-quadruplex fragment (2)
- Basepair signature
- cWW-F-F-cWH-cWH-F
- Heat map statistics
- Min 0.65 | Avg 0.32 | Max 0.65
Coloring options: