HL_5BR8_023

3D structure

PDB id

5BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5BR8_023 not in the Motif Atlas

Geometric match to HL_7LYF_001

Geometric discrepancy: 0.2928

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

5BR8|1|A|C|1029
5BR8|1|A|C|1030
5BR8|1|A|G|1030|||A
5BR8|1|A|C|1030|||B
5BR8|1|A|G|1030|||C
5BR8|1|A|A|1030|||D
5BR8|1|A|G|1031
5BR8|1|A|G|1032

Current chains

Chain A

16S ribosomal RNA

Nearby chains