HL_5CCX_001
3D structure
- PDB id
- 5CCX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the product complex of tRNA m1A58 methyltransferase with tRNA3Lys as substrate
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.1 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5CCX|1|N|U|16, 5CCX|1|N|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5CCX_001 not in the Motif Atlas
- Homologous match to HL_5CCB_001
- Geometric discrepancy: 0.2098
- The information below is about HL_5CCB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_58224.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5CCX|1|N|C|13
5CCX|1|N|A|14||A
5CCX|1|N|G|15||A
5CCX|1|N|U|16
5CCX|1|N|C|17
5CCX|1|N|G|18
5CCX|1|N|G|19
5CCX|1|N|U|20
5CCX|1|N|A|21
5CCX|1|N|G|22
Current chains
- Chain N
- tRNA3Lys
Nearby chains
- Chain A
- tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
- Chain B
- tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Coloring options: