5CCX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5CCX_001 | 1/N/13:22 | No text annotation | homologous HL_5CCB_001 HL_58224.1 | |
| HL_5CCX_002 | 1/N/33:37 | No text annotation | geometric HL_5CCB_002 HL_32346.6 | |
| HL_5CCX_004 | 1/N/13:22 | No text annotation | geometric HL_5MSF_001 HL_89167.3 | |
| HL_5CCX_005 | 1/N/33:37 | No text annotation | geometric HL_5CCB_002 HL_32346.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5CCX_003 | T-loop related | ||
| HL_5CCX_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5CCX_001 | 1/N/31:33, 1/N/37:39 | Isolated non-canonical cWW pair | homologous IL_5CCB_001 IL_01003.5 | |
| IL_5CCX_002 | 1/N/31:33, 1/N/37:39 | Isolated non-canonical cWW pair | geometric IL_5CCB_001 IL_01003.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_5CCX_001 | 1/N/7:10, 1/N/25:27, 1/N/43:49, 1/N/65:66 | tRNA junction | homologous J4_5CCB_001 J4_82510.1 | |
| J4_5CCX_002 | 1/N/7:10, 1/N/25:27, 1/N/43:49, 1/N/65:66 | No text annotation |
Problematic loops
No problematic loops
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