HL_5CD1_001
3D structure
- PDB id
- 5CD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5CD1|1|M|U|16, 5CD1|1|M|C|17, 5CD1|1|M|G|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5CD1_001 not in the Motif Atlas
- Homologous match to HL_5UD5_001
- Geometric discrepancy: 0.4164
- The information below is about HL_5UD5_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_48417.6
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
5CD1|1|M|C|13
5CD1|1|M|A|14
5CD1|1|M|G|15
5CD1|1|M|U|16
5CD1|1|M|C|17
5CD1|1|M|G|18
5CD1|1|M|G|19
5CD1|1|M|U|20
5CD1|1|M|A|21
5CD1|1|M|G|22
Current chains
- Chain M
- tRNA3Lys
Nearby chains
- Chain A
- tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
- Chain B
- tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
- Chain E
- tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
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