5CD1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5CD1_001 | 1/M/13:22 | No text annotation | homologous HL_5UD5_001 HL_48417.5 | |
| HL_5CD1_003 | 1/M/53:61 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_5CD1_004 | 1/N/13:22 | No text annotation | homologous HL_6ORD_035 NA | |
| HL_5CD1_005 | 1/N/33:37 | No text annotation | homologous HL_5CCB_002 HL_32346.4 | |
| HL_5CD1_006 | 1/N/52:62 | No text annotation | homologous HL_4WSM_226 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5CD1_002 | No text annotation | ||
| HL_5CD1_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5CD1_001 | 1/M/31:33, 1/M/37:39 | Isolated non-canonical cWW pair | homologous IL_5CCB_001 IL_87907.2 | |
| IL_5CD1_003 | 1/N/0:1, 1/N/72:75 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_5CD1_004 | 1/N/31:33, 1/N/37:39 | No text annotation | homologous HL_2BTE_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5CD1_002 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_5CD1_001 | 1/M/7:10, 1/M/25:27, 1/M/43:49, 1/M/65:66 | tRNA junction | homologous J4_5CCB_001 J4_70449.28 | |
| J4_5CD1_002 | 1/N/7:10, 1/N/25:27, 1/N/43:49, 1/N/65:66 | tRNA junction | homologous J4_5CCB_001 J4_70449.28 |
Problematic loops
No problematic loops
Coloring options: