HL_5CZZ_002

3D structure

PDB id

5CZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Staphylococcus aureus Cas9 in complex with sgRNA and target DNA (TTGAAT PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAAAUG

Length

7 nucleotides

Bulged bases

5CZZ|1|B|A|62, 5CZZ|1|B|U|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35894.2

Basepair signature

cWW-cSW-R-R

Number of instances in this motif group

7

Unit IDs

5CZZ|1|B|C|59
5CZZ|1|B|A|60
5CZZ|1|B|A|61
5CZZ|1|B|A|62
5CZZ|1|B|A|63
5CZZ|1|B|U|64
5CZZ|1|B|G|65

Current chains

Chain B

RNA (73-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9