Motif HL_35894.2 Version HL_35894.2 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KJI_001 | 4KJI | 0.7601 | 2 | C | RsmZ-2 | G | 5 | A | 6 | G | 8 | G | 9 | A | 10 | C | 12 | cWW | ||
| 2 | HL_5M3H_001 | 5M3H | 0.0000 | 0 | V | RNA 5'-pAGUAGUAACAAGAGGG | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ||
| 3 | HL_4WSB_001 | 4WSB | 0.0641 | 0 | V | Influenza A polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ||
| 4 | HL_5FMZ_001 | 5FMZ | 0.0985 | 0 | H | RNA (12-mer) | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ||
| 5 | HL_4WRT_001 | 4WRT | 0.0823 | 0 | V | Influenza virus polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ncSW | |
| 6 | HL_5CZZ_002 | 5CZZ | 0.5919 | 1 | B | RNA (73-MER) | C | 59 | A | 60 | A | 61 | A | 62 | A | 63 | G | 65 | cWW | ncSW | |
| 7 | HL_5J7L_140 | 5J7L | 0.9007 | 0 | DA | LSU rRNA | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUAA | 4 |
| GAAGGAUC | 1 |
| CAAAAUG | 1 |
| CAACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUA | 4 |
| AAGGAU | 1 |
| AAAAU | 1 |
| AACC | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: