HL_5D5L_008
3D structure
- PDB id
- 5D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UACUUAUUUCCUUUGA
- Length
- 16 nucleotides
- Bulged bases
- 5D5L|1|C|A|33, 5D5L|1|C|U|34, 5D5L|1|C|U|35
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5D5L_008 not in the Motif Atlas
- Geometric match to HL_5D5L_002
- Geometric discrepancy: 0.3353
- The information below is about HL_5D5L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5D5L|1|C|U|28
5D5L|1|C|A|29
5D5L|1|C|C|30
5D5L|1|C|U|31
5D5L|1|C|U|32
5D5L|1|C|A|33
5D5L|1|C|U|34
5D5L|1|C|U|35
5D5L|1|C|U|36
5D5L|1|C|C|37
5D5L|1|C|C|38
5D5L|1|C|U|39
5D5L|1|C|U|40
5D5L|1|C|U|41
5D5L|1|C|G|42
5D5L|1|C|A|43
Current chains
- Chain C
- PreQ1-II riboswitch
Nearby chains
- Chain B
- PreQ1-II riboswitch
Coloring options: