HL_5D8B_010
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5D8B_010 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.1127
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5D8B|1|FD|G|31
5D8B|1|FD|C|32
5D8B|1|FD|U|33
5D8B|1|FD|C|34
5D8B|1|FD|A|35
5D8B|1|FD|U|36
5D8B|1|FD|A|37
5D8B|1|FD|A|38
5D8B|1|FD|C|39
Current chains
- Chain FD
- tRNA
Nearby chains
- Chain BD
- Transfer RNA; tRNA
- Chain FC
- 30S ribosomal protein S9
- Chain HD
- mRNA
- Chain YC
- Small subunit ribosomal RNA; SSU rRNA
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