5D8B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_5D8B_250 | 1/AD/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
HL_5D8B_001 | 1/AD/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
HL_5D8B_002 | 1/AD/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.8 | |
HL_5D8B_003 | 1/BD/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
HL_5D8B_004 | 1/BD/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.7 | |
HL_5D8B_005 | 1/BD/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_28252.9 | |
HL_5D8B_006 | 1/ED/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
HL_5D8B_007 | 1/ED/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.7 | |
HL_5D8B_008 | 1/ED/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AXM_003 HL_28252.9 | |
HL_5D8B_009 | 1/FD/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20811.4 | |
HL_5D8B_010 | 1/FD/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.7 | |
HL_5D8B_011 | 1/FD/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5AXM_003 HL_28252.9 | |
HL_5D8B_012 | 1/UC/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
HL_5D8B_013 | 1/UC/79:90 | No text annotation | ||
HL_5D8B_222 | 1/UC/102:103 | No text annotation | homologous HL_4LFB_023 NA | |
HL_5D8B_015 | 1/UC/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
HL_5D8B_016 | 1/UC/186G:191A | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
HL_5D8B_017 | 1/UC/200:217 | No text annotation | homologous HL_6CZR_076 NA | |
HL_5D8B_018 | 1/UC/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
HL_5D8B_019 | 1/UC/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
HL_5D8B_020 | 1/UC/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
HL_5D8B_021 | 1/UC/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
HL_5D8B_022 | 1/UC/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
HL_5D8B_023 | 1/UC/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
HL_5D8B_024 | 1/UC/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
HL_5D8B_025 | 1/UC/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_5D8B_026 | 1/UC/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
HL_5D8B_027 | 1/UC/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
HL_5D8B_028 | 1/UC/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
HL_5D8B_029 | 1/UC/786:796 | No text annotation | homologous HL_6CZR_088 NA | |
HL_5D8B_225 | 1/UC/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
HL_5D8B_031 | 1/UC/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
HL_5D8B_032 | 1/UC/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
HL_5D8B_033 | 1/UC/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
HL_5D8B_034 | 1/UC/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
HL_5D8B_036 | 1/UC/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
HL_5D8B_037 | 1/UC/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
HL_5D8B_038 | 1/UC/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
HL_5D8B_039 | 1/UC/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
HL_5D8B_040 | 1/UC/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
HL_5D8B_041 | 1/UC/1314:1323 | T-loop with 3 stacked bulged bases | geometric HL_5J7L_028 HL_02887.3 | |
HL_5D8B_043 | 1/UC/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
HL_5D8B_044 | 1/UC/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
HL_5D8B_045 | 1/VC/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
HL_5D8B_046 | 1/VC/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
HL_5D8B_047 | 1/VC/123:128 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
HL_5D8B_048 | 1/VC/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
HL_5D8B_050 | 1/VC/194:201 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
HL_5D8B_051 | 1/VC/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
HL_5D8B_052 | 1/VC/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
HL_5D8B_251 | 1/VC/270K:270Q | No text annotation | homologous HL_9DFE_008 NA | |
HL_5D8B_054 | 1/VC/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
HL_5D8B_055 | 1/VC/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
HL_5D8B_056 | 1/VC/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
HL_5D8B_228 | 1/VC/383:391 | No text annotation | ||
HL_5D8B_058 | 1/VC/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
HL_5D8B_059 | 1/VC/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
HL_5D8B_060 | 1/VC/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.8 | |
HL_5D8B_061 | 1/VC/544:549 | GNRA | geometric HL_7RQB_046 NA | |
HL_5D8B_062 | 1/VC/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_28252.9 | |
HL_5D8B_063 | 1/VC/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
HL_5D8B_064 | 1/VC/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
HL_5D8B_065 | 1/VC/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
HL_5D8B_067 | 1/VC/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
HL_5D8B_068 | 1/VC/779:785 | UNCG variation | homologous HL_7A0S_023 HL_53890.2 | |
HL_5D8B_069 | 1/VC/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
HL_5D8B_229 | 1/VC/883:893 | No text annotation | ||
HL_5D8B_070 | 1/VC/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
HL_5D8B_071 | 1/VC/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
HL_5D8B_072 | 1/VC/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
HL_5D8B_073 | 1/VC/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
HL_5D8B_074 | 1/VC/1171:1178 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_5D8B_075 | 1/VC/1222:1227 | GNRA | geometric HL_4WFL_003 HL_37824.8 | |
HL_5D8B_076 | 1/VC/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.9 | |
HL_5D8B_077 | 1/VC/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
HL_5D8B_078 | 1/VC/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
HL_5D8B_079 | 1/VC/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
HL_5D8B_080 | 1/VC/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
HL_5D8B_081 | 1/VC/1492:1498 | No text annotation | ||
HL_5D8B_082 | 1/VC/1533:1538 | GNRA variation | geometric HL_3AM1_002 HL_37824.8 | |
HL_5D8B_083 | 1/VC/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
HL_5D8B_084 | 1/VC/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
HL_5D8B_086 | 1/VC/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
HL_5D8B_232 | 1/VC/1727:1733 | GNRA | homologous HL_9DFE_041 HL_37824.8 | |
HL_5D8B_088 | 1/VC/1752:1756 | No text annotation | geometric HL_8VTW_043 NA | |
HL_5D8B_089 | 1/VC/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
HL_5D8B_090 | 1/VC/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
HL_5D8B_091 | 1/VC/1864:1878 | GNRA | homologous HL_7A0S_047 HL_37824.8 | |
HL_5D8B_092 | 1/VC/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
HL_5D8B_093 | 1/VC/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
HL_5D8B_094 | 1/VC/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
HL_5D8B_096 | 1/VC/2209:2215 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
HL_5D8B_097 | 1/VC/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
HL_5D8B_098 | 1/VC/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
HL_5D8B_252 | 1/VC/2304:2312 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
HL_5D8B_100 | 1/VC/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
HL_5D8B_101 | 1/VC/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
HL_5D8B_102 | 1/VC/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
HL_5D8B_103 | 1/VC/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
HL_5D8B_104 | 1/VC/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
HL_5D8B_105 | 1/VC/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
HL_5D8B_106 | 1/VC/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
HL_5D8B_107 | 1/VC/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
HL_5D8B_234 | 1/VC/2652:2668 | No text annotation | ||
HL_5D8B_108 | 1/VC/2658:2663 | GNRA | geometric HL_4FRG_002 HL_37824.8 | |
HL_5D8B_109 | 1/VC/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
HL_5D8B_110 | 1/VC/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
HL_5D8B_112 | 1/VC/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
HL_5D8B_113 | 1/VC/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
HL_5D8B_253 | 1/WC/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
HL_5D8B_114 | 1/WC/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
HL_5D8B_115 | 1/WC/86:90 | GNRA | homologous HL_7A0S_070 HL_37824.8 | |
HL_5D8B_116 | 1/XC/13:22 | No text annotation | homologous HL_6PMO_003 NA | |
HL_5D8B_117 | 1/XC/31:39 | tRNA anticodon loop | homologous HL_6UFM_002 HL_06059.7 | |
HL_5D8B_118 | 1/XC/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_28252.9 | |
HL_5D8B_119 | 1/YC/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
HL_5D8B_120 | 1/YC/79:90 | No text annotation | ||
HL_5D8B_122 | 1/YC/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
HL_5D8B_123 | 1/YC/186G:191A | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
HL_5D8B_124 | 1/YC/200:217 | No text annotation | homologous HL_6CZR_076 NA | |
HL_5D8B_125 | 1/YC/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
HL_5D8B_126 | 1/YC/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
HL_5D8B_127 | 1/YC/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
HL_5D8B_128 | 1/YC/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
HL_5D8B_130 | 1/YC/419:424 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
HL_5D8B_131 | 1/YC/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
HL_5D8B_132 | 1/YC/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_5D8B_133 | 1/YC/617:623 | No text annotation | homologous HL_6CZR_085 NA | |
HL_5D8B_134 | 1/YC/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
HL_5D8B_135 | 1/YC/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
HL_5D8B_239 | 1/YC/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
HL_5D8B_138 | 1/YC/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
HL_5D8B_139 | 1/YC/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
HL_5D8B_140 | 1/YC/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
HL_5D8B_141 | 1/YC/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
HL_5D8B_143 | 1/YC/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
HL_5D8B_144 | 1/YC/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
HL_5D8B_145 | 1/YC/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_87954.2 | |
HL_5D8B_146 | 1/YC/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
HL_5D8B_147 | 1/YC/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
HL_5D8B_148 | 1/YC/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
HL_5D8B_150 | 1/YC/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
HL_5D8B_151 | 1/YC/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
HL_5D8B_152 | 1/ZC/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
HL_5D8B_153 | 1/ZC/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
HL_5D8B_154 | 1/ZC/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
HL_5D8B_155 | 1/ZC/137B:141B | No text annotation | homologous HL_7RQB_004 NA | |
HL_5D8B_157 | 1/ZC/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
HL_5D8B_158 | 1/ZC/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
HL_5D8B_159 | 1/ZC/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
HL_5D8B_160 | 1/ZC/270L:270O | No text annotation | ||
HL_5D8B_254 | 1/ZC/270K:270Q | No text annotation | homologous HL_9DFE_008 NA | |
HL_5D8B_161 | 1/ZC/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
HL_5D8B_162 | 1/ZC/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
HL_5D8B_163 | 1/ZC/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
HL_5D8B_243 | 1/ZC/383:391 | No text annotation | ||
HL_5D8B_165 | 1/ZC/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
HL_5D8B_167 | 1/ZC/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.8 | |
HL_5D8B_168 | 1/ZC/544:549 | GNRA | geometric HL_7RQB_046 NA | |
HL_5D8B_169 | 1/ZC/566:575 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_28252.9 | |
HL_5D8B_170 | 1/ZC/611:617 | No text annotation | homologous HL_7RQB_019 NA | |
HL_5D8B_171 | 1/ZC/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
HL_5D8B_172 | 1/ZC/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
HL_5D8B_174 | 1/ZC/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
HL_5D8B_175 | 1/ZC/779:785 | UNCG variation | homologous HL_7A0S_023 HL_53890.2 | |
HL_5D8B_176 | 1/ZC/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
HL_5D8B_244 | 1/ZC/883:893 | No text annotation | ||
HL_5D8B_177 | 1/ZC/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
HL_5D8B_178 | 1/ZC/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
HL_5D8B_179 | 1/ZC/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
HL_5D8B_180 | 1/ZC/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
HL_5D8B_181 | 1/ZC/1171:1178 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_5D8B_182 | 1/ZC/1222:1227 | GNRA | geometric HL_4WFL_003 HL_37824.8 | |
HL_5D8B_183 | 1/ZC/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.9 | |
HL_5D8B_184 | 1/ZC/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
HL_5D8B_185 | 1/ZC/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
HL_5D8B_186 | 1/ZC/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
HL_5D8B_187 | 1/ZC/1450:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
HL_5D8B_188 | 1/ZC/1492:1498 | No text annotation | ||
HL_5D8B_189 | 1/ZC/1533:1538 | GNRA variation | geometric HL_3AM1_002 HL_37824.8 | |
HL_5D8B_190 | 1/ZC/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
HL_5D8B_191 | 1/ZC/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
HL_5D8B_193 | 1/ZC/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
HL_5D8B_247 | 1/ZC/1727:1733 | GNRA | homologous HL_9DFE_041 HL_37824.8 | |
HL_5D8B_195 | 1/ZC/1752:1756 | No text annotation | geometric HL_8VTW_043 NA | |
HL_5D8B_196 | 1/ZC/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
HL_5D8B_197 | 1/ZC/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
HL_5D8B_198 | 1/ZC/1864:1878 | GNRA | homologous HL_7A0S_047 HL_37824.8 | |
HL_5D8B_199 | 1/ZC/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
HL_5D8B_200 | 1/ZC/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
HL_5D8B_201 | 1/ZC/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
HL_5D8B_202 | 1/ZC/2143:2148 | No text annotation | homologous HL_7RQB_051 NA | |
HL_5D8B_203 | 1/ZC/2209:2215 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
HL_5D8B_204 | 1/ZC/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
HL_5D8B_205 | 1/ZC/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
HL_5D8B_255 | 1/ZC/2304:2312 | No text annotation | homologous HL_7A0S_076 HL_50860.2 | |
HL_5D8B_207 | 1/ZC/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
HL_5D8B_208 | 1/ZC/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
HL_5D8B_209 | 1/ZC/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
HL_5D8B_210 | 1/ZC/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
HL_5D8B_211 | 1/ZC/2471:2479 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
HL_5D8B_212 | 1/ZC/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
HL_5D8B_213 | 1/ZC/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
HL_5D8B_214 | 1/ZC/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
HL_5D8B_249 | 1/ZC/2652:2668 | No text annotation | ||
HL_5D8B_215 | 1/ZC/2658:2663 | GNRA | geometric HL_4FRG_002 HL_37824.8 | |
HL_5D8B_216 | 1/ZC/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
HL_5D8B_217 | 1/ZC/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
HL_5D8B_219 | 1/ZC/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
HL_5D8B_220 | 1/ZC/2856:2861 | GNRA | homologous HL_7RQB_069 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_5D8B_221 | No text annotation | ||
HL_5D8B_014 | No text annotation | ||
HL_5D8B_223 | GNRA with extra near cWW | ||
HL_5D8B_224 | No text annotation | ||
HL_5D8B_030 | No text annotation | ||
HL_5D8B_226 | GNRA with extra near cWW | ||
HL_5D8B_035 | No text annotation | ||
HL_5D8B_227 | No text annotation | ||
HL_5D8B_042 | No text annotation | ||
HL_5D8B_049 | No text annotation | ||
HL_5D8B_053 | No text annotation | ||
HL_5D8B_057 | No text annotation | ||
HL_5D8B_066 | No text annotation | ||
HL_5D8B_230 | No text annotation | ||
HL_5D8B_231 | No text annotation | ||
HL_5D8B_085 | No text annotation | ||
HL_5D8B_087 | No text annotation | ||
HL_5D8B_233 | No text annotation | ||
HL_5D8B_095 | No text annotation | ||
HL_5D8B_099 | No text annotation | ||
HL_5D8B_111 | No text annotation | ||
HL_5D8B_235 | No text annotation | ||
HL_5D8B_121 | No text annotation | ||
HL_5D8B_236 | No text annotation | ||
HL_5D8B_237 | GNRA with extra near cWW | ||
HL_5D8B_129 | GNRA | ||
HL_5D8B_238 | No text annotation | ||
HL_5D8B_136 | No text annotation | ||
HL_5D8B_137 | No text annotation | ||
HL_5D8B_240 | GNRA with extra near cWW | ||
HL_5D8B_142 | No text annotation | ||
HL_5D8B_241 | No text annotation | ||
HL_5D8B_149 | No text annotation | ||
HL_5D8B_156 | No text annotation | ||
HL_5D8B_242 | No text annotation | ||
HL_5D8B_164 | No text annotation | ||
HL_5D8B_166 | GNRA | ||
HL_5D8B_173 | No text annotation | ||
HL_5D8B_245 | No text annotation | ||
HL_5D8B_246 | No text annotation | ||
HL_5D8B_192 | No text annotation | ||
HL_5D8B_194 | No text annotation | ||
HL_5D8B_248 | No text annotation | ||
HL_5D8B_206 | No text annotation | ||
HL_5D8B_218 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_5D8B_001 | 1/AD/17:18, 1/AD/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
IL_5D8B_002 | 1/AD/23:28, 1/AD/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
IL_5D8B_003 | 1/AD/30:31, 1/AD/51:54 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
IL_5D8B_004 | 1/AD/34:38, 1/AD/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
IL_5D8B_005 | 1/AD/71:79, 1/AD/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
IL_5D8B_007 | 1/UC/30:32, 1/UC/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
IL_5D8B_008 | 1/UC/44:45, 1/UC/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
IL_5D8B_009 | 1/UC/47:52, 1/UC/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
IL_5D8B_010 | 1/UC/54:56, 1/UC/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_5D8B_376 | 1/UC/63:66, 1/UC/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
IL_5D8B_011 | 1/UC/67:69, 1/UC/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
IL_5D8B_014 | 1/UC/132:136, 1/UC/227:230 | No text annotation | geometric IL_4LFB_008 IL_64231.5 | |
IL_5D8B_016 | 1/UC/148:153, 1/UC/168:174 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
IL_5D8B_019 | 1/UC/186A:186C, 1/UC/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
IL_5D8B_020 | 1/UC/242:247, 1/UC/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
IL_5D8B_418 | 1/UC/249:252, 1/UC/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
IL_5D8B_022 | 1/UC/292:293, 1/UC/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
IL_5D8B_023 | 1/UC/371:375, 1/UC/389:390 | C-loop | geometric IL_6CZR_127 NA | |
IL_5D8B_378 | 1/UC/375:376, 1/UC/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
IL_5D8B_025 | 1/UC/409:416, 1/UC/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
IL_5D8B_419 | 1/UC/446:450, 1/UC/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
IL_5D8B_027 | 1/UC/450:455, 1/UC/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
IL_5D8B_028 | 1/UC/504:511, 1/UC/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
IL_5D8B_420 | 1/UC/515:521, 1/UC/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
IL_5D8B_030 | 1/UC/569:575, 1/UC/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
IL_5D8B_031 | 1/UC/580:584, 1/UC/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
IL_5D8B_032 | 1/UC/594:596, 1/UC/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
IL_5D8B_033 | 1/UC/597:598, 1/UC/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
IL_5D8B_034 | 1/UC/605:612, 1/UC/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
IL_5D8B_035 | 1/UC/654:655, 1/UC/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
IL_5D8B_382 | 1/UC/657:658, 1/UC/747:749 | Major groove platform | homologous IL_6CZR_140 NA | |
IL_5D8B_037 | 1/UC/662:666, 1/UC/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
IL_5D8B_383 | 1/UC/673:677, 1/UC/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
IL_5D8B_039 | 1/UC/683:688, 1/UC/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
IL_5D8B_040 | 1/UC/774:778, 1/UC/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
IL_5D8B_041 | 1/UC/779:783, 1/UC/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
IL_5D8B_043 | 1/UC/887:894, 1/UC/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
IL_5D8B_421 | 1/UC/922:923, 1/UC/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
IL_5D8B_045 | 1/UC/925:927, 1/UC/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
IL_5D8B_046 | 1/UC/933:935, 1/UC/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
IL_5D8B_047 | 1/UC/953:954, 1/UC/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
IL_5D8B_048 | 1/UC/993:998B, 1/UC/1042:1045 | No text annotation | ||
IL_5D8B_051 | 1/UC/1048:1050, 1/UC/1208:1209 | No text annotation | homologous IL_6CZR_152 NA | |
IL_5D8B_052 | 1/UC/1051:1056, 1/UC/1204:1207 | No text annotation | geometric IL_5J7L_362 IL_49612.1 | |
IL_5D8B_053 | 1/UC/1057:1058, 1/UC/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
IL_5D8B_054 | 1/UC/1060:1061, 1/UC/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
IL_5D8B_055 | 1/UC/1061:1063, 1/UC/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
IL_5D8B_056 | 1/UC/1124:1127, 1/UC/1145:1149 | No text annotation | ||
IL_5D8B_057 | 1/UC/1127:1132, 1/UC/1142:1145 | No text annotation | ||
IL_5D8B_058 | 1/UC/1158:1161, 1/UC/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
IL_5D8B_059 | 1/UC/1247:1253, 1/UC/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
IL_5D8B_060 | 1/UC/1255:1258, 1/UC/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
IL_5D8B_061 | 1/UC/1259:1262, 1/UC/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
IL_5D8B_062 | 1/UC/1303:1308, 1/UC/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
IL_5D8B_064 | 1/UC/1399:1401, 1/UC/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
IL_5D8B_065 | 1/UC/1401:1404, 1/UC/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
IL_5D8B_066 | 1/UC/1405:1407, 1/UC/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_87907.2 | |
IL_5D8B_067 | 1/UC/1407:1409, 1/UC/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
IL_5D8B_068 | 1/UC/1412:1414, 1/UC/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
IL_5D8B_069 | 1/UC/1416:1419, 1/UC/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
IL_5D8B_070 | 1/UC/1431:1435, 1/UC/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
IL_5D8B_071 | 1/UC/1435:1437, 1/UC/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
IL_5D8B_072 | 1/UC/1440:1447, 1/UC/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
IL_5D8B_073 | 1/VC/24:30, 1/VC/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
IL_5D8B_074 | 1/VC/36:37, 1/VC/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
IL_5D8B_075 | 1/VC/43:44, 1/VC/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
IL_5D8B_077 | 1/VC/81:85, 1/VC/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
IL_5D8B_081 | 1/VC/183:184, 1/VC/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
IL_5D8B_082 | 1/VC/188:194, 1/VC/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
IL_5D8B_083 | 1/VC/239:245, 1/VC/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
IL_5D8B_085 | 1/VC/273A:273B, 1/VC/363F:364 | Major groove platform | geometric IL_1XJR_002 IL_48076.6 | |
IL_5D8B_422 | 1/VC/273G:280, 1/VC/360:363A | No text annotation | ||
IL_5D8B_423 | 1/VC/280:284, 1/VC/357:360 | No text annotation | homologous IL_9DFE_009 IL_99646.2 | |
IL_5D8B_089 | 1/VC/288:290, 1/VC/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
IL_5D8B_090 | 1/VC/293:295, 1/VC/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
IL_5D8B_092 | 1/VC/481:484, 1/VC/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
IL_5D8B_093 | 1/VC/564:566, 1/VC/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
IL_5D8B_094 | 1/VC/606:609B, 1/VC/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
IL_5D8B_095 | 1/VC/672:674, 1/VC/806:808 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
IL_5D8B_096 | 1/VC/674:678, 1/VC/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
IL_5D8B_097 | 1/VC/697:698, 1/VC/763:765 | Single bulged A | geometric IL_7A0S_016 IL_31462.7 | |
IL_5D8B_098 | 1/VC/702:703, 1/VC/728:730 | Single bulged G | geometric IL_7RQB_020 NA | |
IL_5D8B_099 | 1/VC/703:707, 1/VC/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
IL_5D8B_100 | 1/VC/738:741, 1/VC/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
IL_5D8B_101 | 1/VC/775:777, 1/VC/787:791 | Multiple bulged bases | geometric IL_7A0S_021 IL_06549.2 | |
IL_5D8B_102 | 1/VC/837:838, 1/VC/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
IL_5D8B_103 | 1/VC/844:846, 1/VC/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
IL_5D8B_104 | 1/VC/846:850, 1/VC/928:931 | No text annotation | geometric IL_7RQB_026 NA | |
IL_5D8B_105 | 1/VC/858:863, 1/VC/913:919 | No text annotation | ||
IL_5D8B_106 | 1/VC/864:868, 1/VC/909:912 | C-loop | homologous IL_7RQB_029 NA | |
IL_5D8B_108 | 1/VC/875:877, 1/VC/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
IL_5D8B_109 | 1/VC/877:879, 1/VC/898:899 | Minor groove platform | homologous IL_7RQB_032 NA | |
IL_5D8B_110 | 1/VC/880:881, 1/VC/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
IL_5D8B_111 | 1/VC/952:954, 1/VC/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
IL_5D8B_112 | 1/VC/994:996, 1/VC/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
IL_5D8B_113 | 1/VC/998:1002, 1/VC/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
IL_5D8B_114 | 1/VC/1004:1011, 1/VC/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
IL_5D8B_115 | 1/VC/1011:1013, 1/VC/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
IL_5D8B_117 | 1/VC/1024:1030, 1/VC/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
IL_5D8B_118 | 1/VC/1031:1034, 1/VC/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
IL_5D8B_119 | 1/VC/1043:1051, 1/VC/1108:1112 | Kink-turn | geometric IL_5J7L_284 IL_99692.2 | |
IL_5D8B_121 | 1/VC/1055:1059, 1/VC/1079:1104 | No text annotation | ||
IL_5D8B_389 | 1/VC/1055:1062, 1/VC/1076:1104 | No text annotation | ||
IL_5D8B_122 | 1/VC/1059:1062, 1/VC/1076:1079 | No text annotation | ||
IL_5D8B_390 | 1/VC/1196:1198, 1/VC/1247:1250 | No text annotation | homologous IL_9DFE_044 IL_42997.3 | |
IL_5D8B_124 | 1/VC/1202:1206, 1/VC/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
IL_5D8B_125 | 1/VC/1208:1215, 1/VC/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
IL_5D8B_126 | 1/VC/1219:1221, 1/VC/1229:1230 | Single bulged A | geometric IL_7RQB_048 NA | |
IL_5D8B_128 | 1/VC/1262:1269, 1/VC/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
IL_5D8B_129 | 1/VC/1319:1323, 1/VC/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
IL_5D8B_130 | 1/VC/1351:1355, 1/VC/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
IL_5D8B_131 | 1/VC/1357:1361, 1/VC/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
IL_5D8B_132 | 1/VC/1415:1416, 1/VC/1582:1587 | No text annotation | homologous IL_9DFE_053 IL_00881.1 | |
IL_5D8B_133 | 1/VC/1417:1421, 1/VC/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
IL_5D8B_134 | 1/VC/1433:1435, 1/VC/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
IL_5D8B_135 | 1/VC/1437:1440, 1/VC/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
IL_5D8B_391 | 1/VC/1448:1449, 1/VC/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
IL_5D8B_136 | 1/VC/1469:1473, 1/VC/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
IL_5D8B_137 | 1/VC/1481:1483, 1/VC/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
IL_5D8B_138 | 1/VC/1489:1491, 1/VC/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
IL_5D8B_392 | 1/VC/1526:1530, 1/VC/1541:154 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
IL_5D8B_139 | 1/VC/1651:1656, 1/VC/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
IL_5D8B_140 | 1/VC/1663:1665, 1/VC/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
IL_5D8B_141 | 1/VC/1666:1669, 1/VC/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_50694.7 | |
IL_5D8B_393 | 1/VC/1666:1674, 1/VC/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
IL_5D8B_142 | 1/VC/1669:1674, 1/VC/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
IL_5D8B_143 | 1/VC/1686:1691, 1/VC/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
IL_5D8B_144 | 1/VC/1770:1771, 1/VC/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
IL_5D8B_145 | 1/VC/1798:1804, 1/VC/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
IL_5D8B_146 | 1/VC/1837:1840, 1/VC/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
IL_5D8B_147 | 1/VC/1841:1842, 1/VC/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_66635.5 | |
IL_5D8B_148 | 1/VC/1846:1849, 1/VC/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
IL_5D8B_149 | 1/VC/1851:1855, 1/VC/1887:1891 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.2 | |
IL_5D8B_150 | 1/VC/1856:1860, 1/VC/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
IL_5D8B_152 | 1/VC/1933:1934, 1/VC/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
IL_5D8B_153 | 1/VC/1934:1945, 1/VC/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
IL_5D8B_154 | 1/VC/2050:2052, 1/VC/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
IL_5D8B_424 | 1/VC/2054:2057, 1/VC/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
IL_5D8B_155 | 1/VC/2067:2069, 1/VC/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
IL_5D8B_156 | 1/VC/2070:2071, 1/VC/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
IL_5D8B_157 | 1/VC/2081:2083, 1/VC/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
IL_5D8B_158 | 1/VC/2085:2087, 1/VC/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
IL_5D8B_425 | 1/VC/2108:2120, 1/VC/2178:2181 | No text annotation | ||
IL_5D8B_162 | 1/VC/2124:2127, 1/VC/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
IL_5D8B_426 | 1/VC/2129:2137, 1/VC/2154:2159 | Kink-turn | geometric IL_4LFB_031 IL_95727.1 | |
IL_5D8B_164 | 1/VC/2297:2299, 1/VC/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
IL_5D8B_165 | 1/VC/2350:2353, 1/VC/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
IL_5D8B_166 | 1/VC/2401:2403, 1/VC/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
IL_5D8B_167 | 1/VC/2453:2454, 1/VC/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
IL_5D8B_168 | 1/VC/2454:2455, 1/VC/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
IL_5D8B_169 | 1/VC/2457:2459, 1/VC/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
IL_5D8B_170 | 1/VC/2459:2461, 1/VC/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_4WF9_092 IL_51387.3 | |
IL_5D8B_171 | 1/VC/2466:2470, 1/VC/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_17948.2 | |
IL_5D8B_172 | 1/VC/2507:2508, 1/VC/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
IL_5D8B_173 | 1/VC/2510:2512, 1/VC/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
IL_5D8B_174 | 1/VC/2512:2513, 1/VC/2571:2574 | No text annotation | geometric IL_4WF9_096 IL_42626.2 | |
IL_5D8B_175 | 1/VC/2522:2523, 1/VC/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
IL_5D8B_176 | 1/VC/2591:2592, 1/VC/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
IL_5D8B_177 | 1/VC/2636:2640, 1/VC/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
IL_5D8B_178 | 1/VC/2652:2658, 1/VC/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
IL_5D8B_179 | 1/VC/2680:2684, 1/VC/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
IL_5D8B_181 | 1/VC/2687:2691, 1/VC/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
IL_5D8B_183 | 1/VC/2737:2742, 1/VC/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
IL_5D8B_184 | 1/VC/2838:2839, 1/VC/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
IL_5D8B_185 | 1/VC/2843:2846, 1/VC/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
IL_5D8B_395 | 1/VC/2847:2852, 1/VC/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
IL_5D8B_187 | 1/WC/17:18, 1/WC/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
IL_5D8B_188 | 1/WC/23:28, 1/WC/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
IL_5D8B_189 | 1/WC/30:31, 1/WC/51:54 | No text annotation | homologous IL_8P9A_366 IL_15052.4 | |
IL_5D8B_190 | 1/WC/34:38, 1/WC/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
IL_5D8B_191 | 1/WC/71:79, 1/WC/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
IL_5D8B_193 | 1/YC/30:32, 1/YC/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
IL_5D8B_194 | 1/YC/44:45, 1/YC/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
IL_5D8B_195 | 1/YC/47:52, 1/YC/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
IL_5D8B_196 | 1/YC/54:56, 1/YC/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
IL_5D8B_197 | 1/YC/67:69, 1/YC/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
IL_5D8B_199 | 1/YC/129A:131, 1/YC/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
IL_5D8B_200 | 1/YC/132:136, 1/YC/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
IL_5D8B_202 | 1/YC/148:153, 1/YC/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
IL_5D8B_205 | 1/YC/186A:186C, 1/YC/191E:191G | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
IL_5D8B_206 | 1/YC/242:247, 1/YC/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
IL_5D8B_427 | 1/YC/249:252, 1/YC/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
IL_5D8B_208 | 1/YC/292:293, 1/YC/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
IL_5D8B_209 | 1/YC/371:375, 1/YC/389:390 | C-loop | homologous IL_6CZR_127 NA | |
IL_5D8B_400 | 1/YC/375:376, 1/YC/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.14 | |
IL_5D8B_211 | 1/YC/409:416, 1/YC/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
IL_5D8B_428 | 1/YC/446:450, 1/YC/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
IL_5D8B_213 | 1/YC/450:455, 1/YC/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
IL_5D8B_214 | 1/YC/504:511, 1/YC/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
IL_5D8B_429 | 1/YC/515:521, 1/YC/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
IL_5D8B_216 | 1/YC/569:575, 1/YC/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
IL_5D8B_217 | 1/YC/580:584, 1/YC/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
IL_5D8B_218 | 1/YC/594:596, 1/YC/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
IL_5D8B_219 | 1/YC/597:598, 1/YC/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
IL_5D8B_220 | 1/YC/605:612, 1/YC/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
IL_5D8B_221 | 1/YC/654:655, 1/YC/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
IL_5D8B_404 | 1/YC/657:658, 1/YC/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
IL_5D8B_223 | 1/YC/662:666, 1/YC/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
IL_5D8B_405 | 1/YC/673:677, 1/YC/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
IL_5D8B_225 | 1/YC/683:688, 1/YC/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
IL_5D8B_226 | 1/YC/774:778, 1/YC/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
IL_5D8B_227 | 1/YC/779:783, 1/YC/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
IL_5D8B_229 | 1/YC/887:894, 1/YC/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
IL_5D8B_430 | 1/YC/922:923, 1/YC/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
IL_5D8B_231 | 1/YC/925:927, 1/YC/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
IL_5D8B_232 | 1/YC/933:935, 1/YC/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
IL_5D8B_233 | 1/YC/953:954, 1/YC/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
IL_5D8B_234 | 1/YC/993:998B, 1/YC/1042:1045 | No text annotation | ||
IL_5D8B_237 | 1/YC/1048:1050, 1/YC/1208:1209 | No text annotation | homologous IL_6CZR_152 NA | |
IL_5D8B_238 | 1/YC/1051:1056, 1/YC/1204:1207 | No text annotation | geometric IL_5J7L_362 IL_49612.1 | |
IL_5D8B_239 | 1/YC/1057:1058, 1/YC/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
IL_5D8B_240 | 1/YC/1060:1061, 1/YC/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
IL_5D8B_241 | 1/YC/1061:1063, 1/YC/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
IL_5D8B_242 | 1/YC/1124:1127, 1/YC/1145:1149 | No text annotation | ||
IL_5D8B_243 | 1/YC/1127:1132, 1/YC/1142:1145 | No text annotation | ||
IL_5D8B_244 | 1/YC/1158:1161, 1/YC/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
IL_5D8B_245 | 1/YC/1247:1253, 1/YC/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
IL_5D8B_246 | 1/YC/1255:1258, 1/YC/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
IL_5D8B_247 | 1/YC/1259:1262, 1/YC/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
IL_5D8B_248 | 1/YC/1303:1308, 1/YC/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
IL_5D8B_250 | 1/YC/1399:1401, 1/YC/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
IL_5D8B_251 | 1/YC/1401:1404, 1/YC/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
IL_5D8B_252 | 1/YC/1405:1407, 1/YC/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V9F_017 IL_87907.2 | |
IL_5D8B_253 | 1/YC/1407:1409, 1/YC/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
IL_5D8B_254 | 1/YC/1412:1414, 1/YC/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
IL_5D8B_255 | 1/YC/1416:1419, 1/YC/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
IL_5D8B_256 | 1/YC/1431:1435, 1/YC/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
IL_5D8B_257 | 1/YC/1435:1437, 1/YC/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
IL_5D8B_258 | 1/YC/1440:1447, 1/YC/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
IL_5D8B_259 | 1/ZC/24:30, 1/ZC/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
IL_5D8B_260 | 1/ZC/36:37, 1/ZC/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
IL_5D8B_408 | 1/ZC/43:44, 1/ZC/434:436 | Minor groove platform | homologous IL_7A0S_003 IL_51454.3 | |
IL_5D8B_263 | 1/ZC/81:85, 1/ZC/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
IL_5D8B_267 | 1/ZC/183:184, 1/ZC/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
IL_5D8B_268 | 1/ZC/188:194, 1/ZC/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
IL_5D8B_269 | 1/ZC/239:245, 1/ZC/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
IL_5D8B_270 | 1/ZC/270J:270L, 1/ZC/270O:270R | No text annotation | ||
IL_5D8B_272 | 1/ZC/273A:273B, 1/ZC/363F:364 | Major groove platform | geometric IL_1XJR_002 IL_48076.6 | |
IL_5D8B_431 | 1/ZC/273G:280, 1/ZC/360:363A | No text annotation | ||
IL_5D8B_432 | 1/ZC/280:284, 1/ZC/357:360 | No text annotation | homologous IL_9DFE_009 IL_99646.2 | |
IL_5D8B_276 | 1/ZC/288:290, 1/ZC/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
IL_5D8B_277 | 1/ZC/293:295, 1/ZC/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
IL_5D8B_279 | 1/ZC/481:484, 1/ZC/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
IL_5D8B_280 | 1/ZC/564:566, 1/ZC/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
IL_5D8B_281 | 1/ZC/606:609B, 1/ZC/618B:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
IL_5D8B_282 | 1/ZC/672:674, 1/ZC/806:808 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
IL_5D8B_283 | 1/ZC/674:678, 1/ZC/799:806 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
IL_5D8B_284 | 1/ZC/697:698, 1/ZC/763:765 | Single bulged A | geometric IL_7A0S_016 IL_31462.7 | |
IL_5D8B_285 | 1/ZC/702:703, 1/ZC/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
IL_5D8B_286 | 1/ZC/703:707, 1/ZC/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
IL_5D8B_287 | 1/ZC/738:741, 1/ZC/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
IL_5D8B_288 | 1/ZC/775:777, 1/ZC/787:791 | Multiple bulged bases | geometric IL_7A0S_021 IL_06549.2 | |
IL_5D8B_289 | 1/ZC/837:838, 1/ZC/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
IL_5D8B_290 | 1/ZC/844:846, 1/ZC/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
IL_5D8B_291 | 1/ZC/846:850, 1/ZC/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
IL_5D8B_292 | 1/ZC/858:863, 1/ZC/913:919 | No text annotation | ||
IL_5D8B_293 | 1/ZC/864:868, 1/ZC/909:912 | C-loop | homologous IL_7RQB_029 NA | |
IL_5D8B_295 | 1/ZC/875:877, 1/ZC/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
IL_5D8B_296 | 1/ZC/877:879, 1/ZC/898:899 | Minor groove platform | homologous IL_7RQB_032 NA | |
IL_5D8B_297 | 1/ZC/880:881, 1/ZC/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
IL_5D8B_298 | 1/ZC/952:954, 1/ZC/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
IL_5D8B_299 | 1/ZC/994:996, 1/ZC/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
IL_5D8B_300 | 1/ZC/998:1002, 1/ZC/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
IL_5D8B_301 | 1/ZC/1004:1011, 1/ZC/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
IL_5D8B_302 | 1/ZC/1011:1013, 1/ZC/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
IL_5D8B_304 | 1/ZC/1024:1030, 1/ZC/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
IL_5D8B_305 | 1/ZC/1031:1034, 1/ZC/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
IL_5D8B_306 | 1/ZC/1043:1051, 1/ZC/1108:1112 | Kink-turn | geometric IL_5J7L_284 IL_99692.2 | |
IL_5D8B_308 | 1/ZC/1055:1059, 1/ZC/1079:1104 | No text annotation | ||
IL_5D8B_412 | 1/ZC/1055:1062, 1/ZC/1076:1104 | No text annotation | ||
IL_5D8B_309 | 1/ZC/1059:1062, 1/ZC/1076:1079 | No text annotation | ||
IL_5D8B_433 | 1/ZC/1196:1198, 1/ZC/1247:1250 | No text annotation | homologous IL_9DFE_044 IL_42997.3 | |
IL_5D8B_311 | 1/ZC/1202:1206, 1/ZC/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
IL_5D8B_312 | 1/ZC/1208:1215, 1/ZC/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
IL_5D8B_313 | 1/ZC/1219:1221, 1/ZC/1229:1230 | Single bulged A | geometric IL_7RQB_048 NA | |
IL_5D8B_315 | 1/ZC/1262:1269, 1/ZC/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
IL_5D8B_316 | 1/ZC/1319:1323, 1/ZC/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
IL_5D8B_317 | 1/ZC/1351:1355, 1/ZC/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
IL_5D8B_318 | 1/ZC/1357:1361, 1/ZC/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
IL_5D8B_319 | 1/ZC/1415:1416, 1/ZC/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
IL_5D8B_320 | 1/ZC/1417:1421, 1/ZC/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
IL_5D8B_321 | 1/ZC/1433:1435, 1/ZC/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
IL_5D8B_322 | 1/ZC/1437:1440, 1/ZC/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
IL_5D8B_413 | 1/ZC/1448:1449, 1/ZC/1462:1463 | Single stack bend | homologous IL_9DFE_057 IL_26793.1 | |
IL_5D8B_323 | 1/ZC/1469:1473, 1/ZC/1520:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
IL_5D8B_324 | 1/ZC/1481:1483, 1/ZC/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
IL_5D8B_325 | 1/ZC/1489:1491, 1/ZC/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
IL_5D8B_414 | 1/ZC/1526:1530, 1/ZC/1541:154 | No text annotation | homologous IL_9DFE_062 IL_09044.1 | |
IL_5D8B_326 | 1/ZC/1651:1656, 1/ZC/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
IL_5D8B_327 | 1/ZC/1663:1665, 1/ZC/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
IL_5D8B_328 | 1/ZC/1666:1669, 1/ZC/1993:1994 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_50694.7 | |
IL_5D8B_415 | 1/ZC/1666:1674, 1/ZC/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.4 | |
IL_5D8B_329 | 1/ZC/1669:1674, 1/ZC/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
IL_5D8B_330 | 1/ZC/1686:1691, 1/ZC/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
IL_5D8B_331 | 1/ZC/1770:1771, 1/ZC/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
IL_5D8B_332 | 1/ZC/1798:1804, 1/ZC/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
IL_5D8B_333 | 1/ZC/1837:1840, 1/ZC/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
IL_5D8B_334 | 1/ZC/1841:1842, 1/ZC/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_66635.5 | |
IL_5D8B_335 | 1/ZC/1846:1849, 1/ZC/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
IL_5D8B_336 | 1/ZC/1851:1855, 1/ZC/1887:1891 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.2 | |
IL_5D8B_337 | 1/ZC/1856:1860, 1/ZC/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
IL_5D8B_339 | 1/ZC/1933:1934, 1/ZC/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
IL_5D8B_340 | 1/ZC/1934:1945, 1/ZC/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_42218.2 | |
IL_5D8B_341 | 1/ZC/2050:2052, 1/ZC/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
IL_5D8B_434 | 1/ZC/2054:2057, 1/ZC/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
IL_5D8B_342 | 1/ZC/2067:2069, 1/ZC/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
IL_5D8B_343 | 1/ZC/2070:2071, 1/ZC/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
IL_5D8B_344 | 1/ZC/2081:2083, 1/ZC/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
IL_5D8B_345 | 1/ZC/2085:2087, 1/ZC/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
IL_5D8B_349 | 1/ZC/2124:2127, 1/ZC/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
IL_5D8B_436 | 1/ZC/2129:2137, 1/ZC/2154:2159 | Kink-turn | geometric IL_4LFB_031 IL_95727.1 | |
IL_5D8B_351 | 1/ZC/2297:2299, 1/ZC/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
IL_5D8B_352 | 1/ZC/2350:2353, 1/ZC/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
IL_5D8B_353 | 1/ZC/2401:2403, 1/ZC/2414:2415 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
IL_5D8B_354 | 1/ZC/2453:2454, 1/ZC/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
IL_5D8B_355 | 1/ZC/2454:2455, 1/ZC/2496:2498 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
IL_5D8B_356 | 1/ZC/2457:2459, 1/ZC/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
IL_5D8B_357 | 1/ZC/2459:2461, 1/ZC/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_51387.3 | |
IL_5D8B_358 | 1/ZC/2466:2470, 1/ZC/2480:2484 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_17948.2 | |
IL_5D8B_359 | 1/ZC/2507:2508, 1/ZC/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
IL_5D8B_360 | 1/ZC/2510:2512, 1/ZC/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
IL_5D8B_361 | 1/ZC/2512:2513, 1/ZC/2571:2574 | No text annotation | homologous IL_4WF9_096 IL_42626.2 | |
IL_5D8B_362 | 1/ZC/2522:2523, 1/ZC/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
IL_5D8B_363 | 1/ZC/2591:2592, 1/ZC/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
IL_5D8B_364 | 1/ZC/2636:2640, 1/ZC/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
IL_5D8B_365 | 1/ZC/2652:2658, 1/ZC/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
IL_5D8B_366 | 1/ZC/2680:2684, 1/ZC/2725:2727 | C-loop | geometric IL_5J7L_347 IL_63596.11 | |
IL_5D8B_368 | 1/ZC/2687:2691, 1/ZC/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
IL_5D8B_370 | 1/ZC/2737:2742, 1/ZC/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
IL_5D8B_371 | 1/ZC/2838:2839, 1/ZC/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
IL_5D8B_372 | 1/ZC/2843:2846, 1/ZC/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
IL_5D8B_417 | 1/ZC/2847:2852, 1/ZC/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_5D8B_374 | No text annotation | ||
IL_5D8B_375 | No text annotation | ||
IL_5D8B_006 | Isolated non-canonical cWW pair | ||
IL_5D8B_012 | Isolated non-canonical cWW pair | ||
IL_5D8B_013 | Multiple bulged bases | ||
IL_5D8B_015 | Multiple bulged bases | ||
IL_5D8B_377 | tWH-tWH-tHW-tHW | ||
IL_5D8B_017 | Isolated non-canonical cWW pair | ||
IL_5D8B_018 | Isolated non-canonical cWW pair | ||
IL_5D8B_021 | No text annotation | ||
IL_5D8B_024 | Single bulged G, near cWW | ||
IL_5D8B_379 | No text annotation | ||
IL_5D8B_026 | No text annotation | ||
IL_5D8B_380 | No text annotation | ||
IL_5D8B_029 | No text annotation | ||
IL_5D8B_381 | No text annotation | ||
IL_5D8B_036 | Isolated non-canonical cWW pair | ||
IL_5D8B_038 | No text annotation | ||
IL_5D8B_042 | No text annotation | ||
IL_5D8B_044 | Isolated non-canonical cWW pair | ||
IL_5D8B_049 | Tandem non-canonical cWW pairs | ||
IL_5D8B_050 | Isolated near basepair | ||
IL_5D8B_384 | No text annotation | ||
IL_5D8B_385 | No text annotation | ||
IL_5D8B_063 | Isolated non-canonical cWW pair | ||
IL_5D8B_076 | No text annotation | ||
IL_5D8B_078 | No text annotation | ||
IL_5D8B_079 | No text annotation | ||
IL_5D8B_080 | No text annotation | ||
IL_5D8B_084 | No text annotation | ||
IL_5D8B_086 | Isolated non-canonical cWW pair | ||
IL_5D8B_386 | Isolated non-canonical cWW with bulges | ||
IL_5D8B_087 | No text annotation | ||
IL_5D8B_387 | No text annotation | ||
IL_5D8B_088 | tSH-tHW-tHS | ||
IL_5D8B_091 | Isolated non-canonical cWW pair | ||
IL_5D8B_107 | Isolated cWS basepair | ||
IL_5D8B_116 | No text annotation | ||
IL_5D8B_388 | No text annotation | ||
IL_5D8B_120 | Isolated non-canonical cWW pair | ||
IL_5D8B_123 | Tandem non-canonical cWW pairs | ||
IL_5D8B_127 | Not an internal loop | ||
IL_5D8B_151 | Isolated non-canonical cWW pair | ||
IL_5D8B_159 | Isolated cWH basepair | ||
IL_5D8B_160 | No text annotation | ||
IL_5D8B_161 | Isolated non-canonical cWW pair | ||
IL_5D8B_163 | No text annotation | ||
IL_5D8B_394 | No text annotation | ||
IL_5D8B_180 | Isolated non-canonical cWW pair | ||
IL_5D8B_182 | Multiple bulged bases | ||
IL_5D8B_186 | No text annotation | ||
IL_5D8B_396 | No text annotation | ||
IL_5D8B_397 | No text annotation | ||
IL_5D8B_192 | Isolated non-canonical cWW pair | ||
IL_5D8B_398 | Multiple bulged bases | ||
IL_5D8B_198 | Isolated non-canonical cWW pair | ||
IL_5D8B_201 | Multiple bulged bases | ||
IL_5D8B_399 | tWH-tWH-tHW-tHW | ||
IL_5D8B_203 | Isolated non-canonical cWW pair | ||
IL_5D8B_204 | Isolated non-canonical cWW pair | ||
IL_5D8B_207 | No text annotation | ||
IL_5D8B_210 | Single bulged G, near cWW | ||
IL_5D8B_401 | No text annotation | ||
IL_5D8B_212 | No text annotation | ||
IL_5D8B_402 | No text annotation | ||
IL_5D8B_215 | No text annotation | ||
IL_5D8B_403 | No text annotation | ||
IL_5D8B_222 | Isolated non-canonical cWW pair | ||
IL_5D8B_224 | No text annotation | ||
IL_5D8B_228 | No text annotation | ||
IL_5D8B_230 | Isolated non-canonical cWW pair | ||
IL_5D8B_235 | Tandem non-canonical cWW pairs | ||
IL_5D8B_236 | Isolated near basepair | ||
IL_5D8B_406 | No text annotation | ||
IL_5D8B_407 | No text annotation | ||
IL_5D8B_249 | Isolated non-canonical cWW pair | ||
IL_5D8B_261 | Major groove platform with extra cWW | ||
IL_5D8B_262 | No text annotation | ||
IL_5D8B_264 | No text annotation | ||
IL_5D8B_265 | No text annotation | ||
IL_5D8B_266 | No text annotation | ||
IL_5D8B_271 | No text annotation | ||
IL_5D8B_273 | Isolated non-canonical cWW pair | ||
IL_5D8B_409 | Isolated non-canonical cWW with bulges | ||
IL_5D8B_274 | No text annotation | ||
IL_5D8B_410 | No text annotation | ||
IL_5D8B_275 | tSH-tHW-tHS | ||
IL_5D8B_278 | Isolated non-canonical cWW pair | ||
IL_5D8B_294 | Isolated cWS basepair | ||
IL_5D8B_303 | No text annotation | ||
IL_5D8B_411 | No text annotation | ||
IL_5D8B_307 | Isolated non-canonical cWW pair | ||
IL_5D8B_310 | Tandem non-canonical cWW pairs | ||
IL_5D8B_314 | Not an internal loop | ||
IL_5D8B_338 | Isolated non-canonical cWW pair | ||
IL_5D8B_346 | Isolated cWH basepair | ||
IL_5D8B_347 | No text annotation | ||
IL_5D8B_435 | No text annotation | ||
IL_5D8B_348 | Isolated non-canonical cWW pair | ||
IL_5D8B_350 | No text annotation | ||
IL_5D8B_416 | No text annotation | ||
IL_5D8B_367 | Isolated non-canonical cWW pair | ||
IL_5D8B_369 | Multiple bulged bases | ||
IL_5D8B_373 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_5D8B_033 | 1/AD/11:16, 1/AD/68:69, 1/AD/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
J3_5D8B_034 | 1/UC/46:47, 1/UC/361:369, 1/UC/392:395 | No text annotation | ||
J3_5D8B_035 | 1/UC/46:52, 1/UC/359:369, 1/UC/392:395 | No text annotation | ||
J3_5D8B_036 | 1/UC/586:588, 1/UC/651:654, 1/UC/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
J3_5D8B_037 | 1/UC/586:588, 1/UC/651:655, 1/UC/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
J3_5D8B_038 | 1/UC/672:673, 1/UC/717:725, 1/UC/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
J3_5D8B_001 | 1/UC/826:829, 1/UC/857:861, 1/UC/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
J3_5D8B_039 | 1/UC/936:939, 1/UC/1344:1350, 1/UC/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
J3_5D8B_003 | 1/UC/943:946, 1/UC/1235:1237, 1/UC/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
J3_5D8B_004 | 1/UC/955:962, 1/UC/973:984, 1/UC/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
J3_5D8B_005 | 1/UC/990:993, 1/UC/1045:1047, 1/UC/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
J3_5D8B_075 | 1/UC/990:997, 1/UC/1044:1047, 1/UC/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
J3_5D8B_006 | 1/UC/1003:1006, 1/UC/1023:1027, 1/UC/1034:1037 | No text annotation | ||
J3_5D8B_007 | 1/UC/1063:1068, 1/UC/1107:1113, 1/UC/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
J3_5D8B_076 | 1/UC/1073:1074, 1/UC/1083:1086, 1/UC/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
J3_5D8B_008 | 1/UC/1116:1118, 1/UC/1155:1158, 1/UC/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
J3_5D8B_043 | 1/UC/1116:1118, 1/UC/1155:1161, 1/UC/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
J3_5D8B_009 | 1/UC/1237:1241, 1/UC/1296:1303, 1/UC/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
J3_5D8B_044 | 1/UC/1237:1241, 1/UC/1296:1308, 1/UC/1329:1337 | No text annotation | ||
J3_5D8B_045 | 1/VC/30:31, 1/VC/474:481, 1/VC/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
J3_5D8B_046 | 1/VC/30:31, 1/VC/474:484, 1/VC/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
J3_5D8B_047 | 1/VC/32:35, 1/VC/445:461, 1/VC/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
J3_5D8B_048 | 1/VC/56:57, 1/VC/70:76, 1/VC/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
J3_5D8B_049 | 1/VC/269:270, 1/VC/270:271, 1/VC/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
J3_5D8B_010 | 1/VC/683:689, 1/VC/773:775, 1/VC/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
J3_5D8B_011 | 1/VC/698:700, 1/VC/732:736, 1/VC/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.7 | |
J3_5D8B_012 | 1/VC/1298:1303, 1/VC/1625:1627, 1/VC/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
J3_5D8B_013 | 1/VC/1306:1309, 1/VC/1605:1611, 1/VC/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
J3_5D8B_077 | 1/VC/1344:1350, 1/VC/1381:1385, 1/VC/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
J3_5D8B_051 | 1/VC/1424:1429, 1/VC/1564:1565, 1/VC/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
J3_5D8B_014 | 1/VC/2091:2093, 1/VC/2196:2205, 1/VC/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
J3_5D8B_052 | 1/VC/2282:2284, 1/VC/2384:2395, 1/VC/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
J3_5D8B_016 | 1/VC/2517:2520, 1/VC/2545:2547, 1/VC/2561:2567 | No text annotation | homologous J3_7A0S_011 J3_32601.5 | |
J3_5D8B_053 | 1/VC/2814:2815, 1/VC/2831:2836, 1/VC/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
J3_5D8B_054 | 1/WC/11:16, 1/WC/68:69, 1/WC/107:109 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
J3_5D8B_055 | 1/YC/46:47, 1/YC/361:369, 1/YC/392:395 | No text annotation | ||
J3_5D8B_056 | 1/YC/46:52, 1/YC/359:369, 1/YC/392:395 | No text annotation | ||
J3_5D8B_057 | 1/YC/586:588, 1/YC/651:654, 1/YC/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
J3_5D8B_058 | 1/YC/586:588, 1/YC/651:655, 1/YC/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
J3_5D8B_059 | 1/YC/672:673, 1/YC/717:725, 1/YC/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
J3_5D8B_017 | 1/YC/826:829, 1/YC/857:861, 1/YC/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
J3_5D8B_060 | 1/YC/936:939, 1/YC/1344:1350, 1/YC/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
J3_5D8B_019 | 1/YC/943:946, 1/YC/1235:1237, 1/YC/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
J3_5D8B_020 | 1/YC/955:962, 1/YC/973:984, 1/YC/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
J3_5D8B_021 | 1/YC/990:993, 1/YC/1045:1047, 1/YC/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
J3_5D8B_078 | 1/YC/990:997, 1/YC/1044:1047, 1/YC/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
J3_5D8B_022 | 1/YC/1003:1006, 1/YC/1023:1027, 1/YC/1034:1037 | No text annotation | ||
J3_5D8B_023 | 1/YC/1063:1068, 1/YC/1107:1113, 1/YC/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
J3_5D8B_079 | 1/YC/1073:1074, 1/YC/1083:1086, 1/YC/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
J3_5D8B_024 | 1/YC/1116:1118, 1/YC/1155:1158, 1/YC/1181:1184 | No text annotation | homologous J3_4LFB_008 J3_82365.4 | |
J3_5D8B_064 | 1/YC/1116:1118, 1/YC/1155:1161, 1/YC/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
J3_5D8B_025 | 1/YC/1237:1241, 1/YC/1296:1303, 1/YC/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
J3_5D8B_065 | 1/YC/1237:1241, 1/YC/1296:1308, 1/YC/1329:1337 | No text annotation | ||
J3_5D8B_066 | 1/ZC/30:31, 1/ZC/474:481, 1/ZC/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
J3_5D8B_067 | 1/ZC/30:31, 1/ZC/474:484, 1/ZC/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
J3_5D8B_068 | 1/ZC/32:35, 1/ZC/445:461, 1/ZC/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
J3_5D8B_069 | 1/ZC/56:57, 1/ZC/70:76, 1/ZC/110:114 | No text annotation | homologous J3_9DFE_004 J3_35667.2 | |
J3_5D8B_070 | 1/ZC/269:270, 1/ZC/270:271, 1/ZC/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
J3_5D8B_026 | 1/ZC/683:689, 1/ZC/773:775, 1/ZC/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
J3_5D8B_027 | 1/ZC/698:700, 1/ZC/732:736, 1/ZC/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
J3_5D8B_028 | 1/ZC/1298:1303, 1/ZC/1625:1627, 1/ZC/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
J3_5D8B_029 | 1/ZC/1306:1309, 1/ZC/1605:1611, 1/ZC/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
J3_5D8B_080 | 1/ZC/1344:1350, 1/ZC/1381:1385, 1/ZC/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
J3_5D8B_072 | 1/ZC/1424:1429, 1/ZC/1564:1565, 1/ZC/1568:1574 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
J3_5D8B_030 | 1/ZC/2091:2093, 1/ZC/2196:2205, 1/ZC/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
J3_5D8B_073 | 1/ZC/2282:2284, 1/ZC/2384:2395, 1/ZC/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
J3_5D8B_031 | 1/ZC/2295:2297, 1/ZC/2321:2323, 1/ZC/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
J3_5D8B_032 | 1/ZC/2517:2520, 1/ZC/2545:2547, 1/ZC/2561:2567 | No text annotation | homologous J3_7A0S_011 J3_32601.5 | |
J3_5D8B_074 | 1/ZC/2814:2815, 1/ZC/2831:2836, 1/ZC/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
J4_5D8B_001 | 1/BD/7:10, 1/BD/25:27, 1/BD/43:49, 1/BD/65:66 | tRNA junction | homologous J4_6UFG_001 J4_70449.29 | |
J4_5D8B_002 | 1/ED/7:10, 1/ED/25:27, 1/ED/43:49, 1/ED/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.29 | |
J4_5D8B_003 | 1/FD/7:10, 1/FD/25:27, 1/FD/43:49, 1/FD/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.29 | |
J4_5D8B_004 | 1/UC/115:122, 1/UC/239:240, 1/UC/286:289, 1/UC/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
J4_5D8B_005 | 1/UC/142:144, 1/UC/178:183, 1/UC/194:198, 1/UC/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
J4_5D8B_006 | 1/UC/575:577, 1/UC/764:769, 1/UC/810:821, 1/UC/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
J4_5D8B_007 | 1/VC/268:269, 1/VC/370:375, 1/VC/399:406, 1/VC/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
J4_5D8B_008 | 1/VC/297:301, 1/VC/316:319, 1/VC/323:325, 1/VC/337:341 | No text annotation | homologous J4_4WF9_002 J4_71729.5 | |
J4_5D8B_009 | 1/VC/601:604, 1/VC/624:628, 1/VC/635:638, 1/VC/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
J4_5D8B_010 | 1/VC/1270:1276, 1/VC/1294:1295, 1/VC/1645:1648, 1/VC/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
J4_5D8B_011 | 1/VC/1310:1314, 1/VC/1338:1343, 1/VC/1404:1405, 1/VC/1597:1604 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
J4_5D8B_033 | 1/VC/1444:1445, 1/VC/1466:1467, 1/VC/1525:1526, 1/VC/154B:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
J4_5D8B_013 | 1/VC/1674:1682, 1/VC/1706:1707, 1/VC/1751:1764, 1/VC/1988:1990 | No text annotation | ||
J4_5D8B_014 | 1/VC/1772:1776, 1/VC/1788:1792, 1/VC/1827:1830, 1/VC/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
J4_5D8B_015 | 1/VC/1833:1835, 1/VC/1905:1906, 1/VC/1924:1933, 1/VC/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
J4_5D8B_016 | 1/VC/2285:2289, 1/VC/2343:2347, 1/VC/2370:2372, 1/VC/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
J4_5D8B_017 | 1/VC/2643:2646, 1/VC/2674:2676, 1/VC/2731:2735, 1/VC/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
J4_5D8B_018 | 1/XC/7:10, 1/XC/25:27, 1/XC/43:49, 1/XC/65:66 | tRNA junction | homologous J4_6UFG_001 J4_70449.29 | |
J4_5D8B_019 | 1/YC/115:122, 1/YC/239:240, 1/YC/286:289, 1/YC/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
J4_5D8B_020 | 1/YC/142:144, 1/YC/178:183, 1/YC/194:198, 1/YC/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
J4_5D8B_021 | 1/YC/575:577, 1/YC/764:769, 1/YC/810:821, 1/YC/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
J4_5D8B_022 | 1/ZC/268:269, 1/ZC/370:375, 1/ZC/399:406, 1/ZC/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
J4_5D8B_023 | 1/ZC/297:301, 1/ZC/316:319, 1/ZC/323:325, 1/ZC/337:341 | No text annotation | homologous J4_4WF9_002 J4_71729.5 | |
J4_5D8B_024 | 1/ZC/601:604, 1/ZC/624:628, 1/ZC/635:638, 1/ZC/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
J4_5D8B_025 | 1/ZC/1270:1276, 1/ZC/1294:1295, 1/ZC/1645:1648, 1/ZC/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
J4_5D8B_026 | 1/ZC/1310:1314, 1/ZC/1338:1343, 1/ZC/1404:1405, 1/ZC/1597:1604 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
J4_5D8B_034 | 1/ZC/1444:1445, 1/ZC/1466:1467, 1/ZC/1525:1526, 1/ZC/154B:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
J4_5D8B_028 | 1/ZC/1674:1682, 1/ZC/1706:1707, 1/ZC/1751:1764, 1/ZC/1988:1990 | No text annotation | ||
J4_5D8B_029 | 1/ZC/1772:1776, 1/ZC/1788:1792, 1/ZC/1827:1830, 1/ZC/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
J4_5D8B_030 | 1/ZC/1833:1835, 1/ZC/1905:1906, 1/ZC/1924:1933, 1/ZC/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
J4_5D8B_031 | 1/ZC/2285:2289, 1/ZC/2343:2347, 1/ZC/2370:2372, 1/ZC/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
J4_5D8B_032 | 1/ZC/2643:2646, 1/ZC/2674:2676, 1/ZC/2731:2735, 1/ZC/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
J5_5D8B_001 | 1/UC/36:39, 1/UC/403:406, 1/UC/436:442, 1/UC/492:500, 1/UC/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
J5_5D8B_002 | 1/UC/58:61, 1/UC/106:113, 1/UC/314:316, 1/UC/337:339, 1/UC/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
J5_5D8B_003 | 1/VC/47:54, 1/VC/116:121, 1/VC/130:131, 1/VC/148:150, 1/VC/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
J5_5D8B_004 | 1/VC/268:270, 1/VC/270:271, 1/VC/366:375, 1/VC/399:406, 1/VC/421:424 | No text annotation | ||
J5_5D8B_005 | 1/VC/531:533, 1/VC/560:564, 1/VC/577:579, 1/VC/1261:1262, 1/VC/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
J5_5D8B_006 | 1/VC/584:589, 1/VC/668:671, 1/VC/809:812, 1/VC/1195:1196, 1/VC/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
J5_5D8B_017 | 1/VC/2057:2064, 1/VC/2446:2453, 1/VC/2500:2507, 1/VC/2582:2588, 1/VC/2606:2611 | No text annotation | ||
J5_5D8B_008 | 1/VC/2074:2077, 1/VC/2243:2246, 1/VC/2258:2259, 1/VC/2281:2282, 1/VC/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
J5_5D8B_009 | 1/YC/36:39, 1/YC/403:406, 1/YC/436:442, 1/YC/492:500, 1/YC/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
J5_5D8B_010 | 1/YC/58:61, 1/YC/106:113, 1/YC/314:316, 1/YC/337:339, 1/YC/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
J5_5D8B_011 | 1/ZC/47:54, 1/ZC/116:121, 1/ZC/130:131, 1/ZC/148:150, 1/ZC/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
J5_5D8B_012 | 1/ZC/268:270, 1/ZC/270:271, 1/ZC/366:375, 1/ZC/399:406, 1/ZC/421:424 | No text annotation | ||
J5_5D8B_013 | 1/ZC/531:533, 1/ZC/560:564, 1/ZC/577:579, 1/ZC/1261:1262, 1/ZC/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
J5_5D8B_014 | 1/ZC/584:589, 1/ZC/668:671, 1/ZC/809:812, 1/ZC/1195:1196, 1/ZC/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
J5_5D8B_018 | 1/ZC/2057:2064, 1/ZC/2446:2453, 1/ZC/2500:2507, 1/ZC/2582:2588, 1/ZC/2606:2611 | No text annotation | ||
J5_5D8B_016 | 1/ZC/2074:2077, 1/ZC/2243:2246, 1/ZC/2258:2259, 1/ZC/2281:2282, 1/ZC/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
J6_5D8B_001 | 1/VC/45:46, 1/VC/179:183, 1/VC/214:224, 1/VC/231:235, 1/VC/262:266, 1/VC/426:433 | No text annotation | ||
J6_5D8B_002 | 1/ZC/45:46, 1/ZC/179:183, 1/ZC/214:224, 1/ZC/231:235, 1/ZC/262:266, 1/ZC/426:433 | No text annotation | ||
J7_5D8B_005 | 1/VC/8:15, 1/VC/525:531, 1/VC/2018:2023, 1/VC/2040:2043, 1/VC/2625:2630, 1/VC/2788:2811, 1/VC/2889:2895 | No text annotation | ||
J7_5D8B_002 | 1/VC/817:822, 1/VC/835:836, 1/VC/943:946, 1/VC/971:976, 1/VC/987:991, 1/VC/1163:1164, 1/VC/1185:1190 | No text annotation | ||
J7_5D8B_006 | 1/ZC/8:15, 1/ZC/525:531, 1/ZC/2018:2023, 1/ZC/2040:2043, 1/ZC/2625:2630, 1/ZC/2788:2811, 1/ZC/2889:2895 | No text annotation | ||
J7_5D8B_004 | 1/ZC/817:822, 1/ZC/835:836, 1/ZC/943:946, 1/ZC/971:976, 1/ZC/987:991, 1/ZC/1163:1164, 1/ZC/1185:1190 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_5D8B_002 | No text annotation | ||
J3_5D8B_040 | No text annotation | ||
J3_5D8B_041 | No text annotation | ||
J3_5D8B_042 | No text annotation | ||
J3_5D8B_050 | No text annotation | ||
J3_5D8B_015 | No text annotation | ||
J3_5D8B_018 | No text annotation | ||
J3_5D8B_061 | No text annotation | ||
J3_5D8B_062 | No text annotation | ||
J3_5D8B_063 | No text annotation | ||
J3_5D8B_071 | No text annotation | ||
J4_5D8B_012 | No text annotation | ||
J4_5D8B_027 | No text annotation | ||
J5_5D8B_007 | No text annotation | ||
J5_5D8B_015 | No text annotation | ||
J7_5D8B_001 | No text annotation | ||
J7_5D8B_003 | No text annotation |
Coloring options: