HL_5D8B_011
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5D8B_011 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.0932
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
5D8B|1|FD|G|53
5D8B|1|FD|U|54
5D8B|1|FD|U|55
5D8B|1|FD|C|56
5D8B|1|FD|A|57
5D8B|1|FD|A|58
5D8B|1|FD|A|59
5D8B|1|FD|U|60
5D8B|1|FD|C|61
Current chains
- Chain FD
- tRNA
Nearby chains
- Chain GB
- 50S ribosomal protein L16
- Chain ZA
- 50S ribosomal protein L5
- Chain ZC
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: