HL_5D8B_019

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_019 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1348

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5D8B|1|UC|U|296
5D8B|1|UC|G|297
5D8B|1|UC|A|298
5D8B|1|UC|G|299
5D8B|1|UC|A|300
5D8B|1|UC|G|301

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain EA

30S ribosomal protein S4

Chain FA

30S ribosomal protein S5

Chain MA

30S ribosomal protein S12

Chain RA

30S ribosomal protein S17