HL_5D8B_023

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5D8B|1|UC|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_023 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.138

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

5D8B|1|UC|C|419
5D8B|1|UC|U|420
5D8B|1|UC|U|421
5D8B|1|UC|C|422
5D8B|1|UC|G|423
5D8B|1|UC|G|424

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain DA

30S ribosomal protein S3

Chain EA

30S ribosomal protein S4