HL_5D8B_042
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GAUCAGAUGCG*C
- Length
- 12 nucleotides
- Bulged bases
- 5D8B|1|UC|U|1364
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5D8B|1|UC|G|1356
5D8B|1|UC|A|1357
5D8B|1|UC|U|1358
5D8B|1|UC|C|1359
5D8B|1|UC|A|1360
5D8B|1|UC|G|1361
5D8B|1|UC|A|1363
5D8B|1|UC|U|1364
5D8B|1|UC|G|1365
5D8B|1|UC|C|1366
5D8B|1|UC|G|1365
*
5D8B|1|UC|C|1366
Current chains
- Chain UC
- 16S ribosomal RNA
Nearby chains
- Chain DA
- 30S ribosomal protein S3
- Chain JA
- 30S ribosomal protein S9
- Chain KA
- 30S ribosomal protein S10
- Chain NA
- 30S ribosomal protein S13
- Chain OA
- 30S ribosomal protein S14
- Chain VA
- 30S ribosomal protein Thx
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