HL_5D8B_046

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_046 not in the Motif Atlas

Homologous match to HL_7RQB_002

Geometric discrepancy: 0.1491

The information below is about HL_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5D8B|1|VC|C|87
5D8B|1|VC|G|88
5D8B|1|VC|G|89
5D8B|1|VC|U|90
5D8B|1|VC|A|91
5D8B|1|VC|G|92
5D8B|1|VC|C|93
5D8B|1|VC|G|94
5D8B|1|VC|G|95

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23

Chain S

50S ribosomal protein L24

Chain W

50S ribosomal protein L29