HL_5D8B_047

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

5D8B|1|VC|G|125, 5D8B|1|VC|A|126, 5D8B|1|VC|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_047 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1194

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5D8B|1|VC|G|123
5D8B|1|VC|G|124
5D8B|1|VC|G|125
5D8B|1|VC|A|126
5D8B|1|VC|A|127
5D8B|1|VC|C|128

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34

Chain R

50S ribosomal protein L23