HL_5D8B_052
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5D8B_052 not in the Motif Atlas
- Homologous match to HL_7RQB_008
- Geometric discrepancy: 0.0863
- The information below is about HL_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.7
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 9
Unit IDs
5D8B|1|VC|C|246
5D8B|1|VC|G|247
5D8B|1|VC|G|248
5D8B|1|VC|C|249
5D8B|1|VC|G|250
5D8B|1|VC|A|251
5D8B|1|VC|G|252
Current chains
- Chain VC
- 23S ribosomal RNA
Nearby chains
- Chain BA
- 50S ribosomal protein L35
- Chain J
- 50S ribosomal protein L15
- Chain V
- 50S ribosomal protein L28
- Chain XC
- Transfer RNA; tRNA
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