HL_5D8B_059

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_059 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.0806

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5D8B|1|VC|C|462
5D8B|1|VC|G|463
5D8B|1|VC|U|464
5D8B|1|VC|G|465
5D8B|1|VC|A|466
5D8B|1|VC|G|467

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34

Chain C

50S ribosomal protein L4