HL_5D8B_070

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_070 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.4636

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

5D8B|1|VC|C|884
5D8B|1|VC|C|885
5D8B|1|VC|C|886
5D8B|1|VC|A|887
5D8B|1|VC|C|888
5D8B|1|VC|C|889
5D8B|1|VC|A|890
5D8B|1|VC|G|892

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain NA

30S ribosomal protein S13

Chain TA

30S ribosomal protein S19