HL_5D8B_072

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_072 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.1858

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5D8B|1|VC|G|978
5D8B|1|VC|G|979
5D8B|1|VC|A|980
5D8B|1|VC|A|981
5D8B|1|VC|C|982
5D8B|1|VC|A|983
5D8B|1|VC|A|984
5D8B|1|VC|C|985

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain X

50S ribosomal protein L30