HL_5D8B_075

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_075 not in the Motif Atlas

Geometric match to HL_4WFL_003

Geometric discrepancy: 0.1314

The information below is about HL_4WFL_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5D8B|1|VC|C|1222
5D8B|1|VC|G|1223
5D8B|1|VC|C|1224
5D8B|1|VC|G|1225
5D8B|1|VC|A|1226
5D8B|1|VC|G|1227

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21