HL_5D8B_082

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

5D8B|1|VC|U|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_082 not in the Motif Atlas

Geometric match to HL_3AM1_002

Geometric discrepancy: 0.329

The information below is about HL_3AM1_002

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5D8B|1|VC|C|1533
5D8B|1|VC|G|1534
5D8B|1|VC|U|1535
5D8B|1|VC|A|1536
5D8B|1|VC|C|1537
5D8B|1|VC|G|1538

Current chains

Chain VC

23S ribosomal RNA

Nearby chains