HL_5D8B_099

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

5D8B|1|VC|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_099 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.3473

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|VC|G|2303
5D8B|1|VC|G|2304
5D8B|1|VC|A|2305
5D8B|1|VC|C|2306
5D8B|1|VC|G|2307
5D8B|1|VC|G|2308
5D8B|1|VC|A|2309
5D8B|1|VC|A|2310
5D8B|1|VC|A|2311
5D8B|1|VC|U|2312
5D8B|1|VC|C|2313

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain WC

5S ribosomal RNA; 5S rRNA