HL_5D8B_121

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCAGA*G

Length

6 nucleotides

Bulged bases

5D8B|1|YC|C|103

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_121 not in the Motif Atlas

Homologous match to HL_6CZR_235

Geometric discrepancy: 0.5529

The information below is about HL_6CZR_235

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|YC|C|102|||C
5D8B|1|YC|C|103
5D8B|1|YC|A|103|||A
5D8B|1|YC|G|103|||B
5D8B|1|YC|A|103|||A
*
5D8B|1|YC|G|103|||B

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S20