HL_5D8B_127

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_127 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1504

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5D8B|1|YC|C|320
5D8B|1|YC|A|321
5D8B|1|YC|C|322
5D8B|1|YC|U|323
5D8B|1|YC|G|324
5D8B|1|YC|A|325
5D8B|1|YC|G|326
5D8B|1|YC|A|327
5D8B|1|YC|C|328
5D8B|1|YC|A|329
5D8B|1|YC|C|330
5D8B|1|YC|G|331
5D8B|1|YC|G|332
5D8B|1|YC|G|333

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain MC

30S ribosomal protein S16

Chain QC

30S ribosomal protein S20