HL_5D8B_131

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAGGAG

Length

7 nucleotides

Bulged bases

5D8B|1|YC|G|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_131 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.2089

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5D8B|1|YC|C|458
5D8B|1|YC|G|464
5D8B|1|YC|A|465
5D8B|1|YC|G|466
5D8B|1|YC|G|467
5D8B|1|YC|A|468
5D8B|1|YC|G|474

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain MC

30S ribosomal protein S16