HL_5D8B_139

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_139 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.1149

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5D8B|1|YC|C|897
5D8B|1|YC|G|898
5D8B|1|YC|C|899
5D8B|1|YC|A|900
5D8B|1|YC|A|901
5D8B|1|YC|G|902

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain NC

30S ribosomal protein S17

Chain ZC

Large subunit ribosomal RNA; LSU rRNA