HL_5D8B_146

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_146 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.1184

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5D8B|1|YC|C|1165
5D8B|1|YC|G|1166
5D8B|1|YC|A|1167
5D8B|1|YC|A|1169
5D8B|1|YC|A|1170
5D8B|1|YC|G|1171

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain YB

30S ribosomal protein S2