HL_5D8B_156

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUUUCUUG

Length

8 nucleotides

Bulged bases

5D8B|1|ZC|U|162, 5D8B|1|ZC|C|163|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_156 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2302

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5D8B|1|ZC|C|155
5D8B|1|ZC|U|161
5D8B|1|ZC|U|162
5D8B|1|ZC|U|163
5D8B|1|ZC|C|163|||B
5D8B|1|ZC|U|164
5D8B|1|ZC|U|165
5D8B|1|ZC|G|171

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain RB

50S ribosomal protein L28