HL_5D8B_164

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5D8B|1|ZC|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_164 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1257

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5D8B|1|ZC|G|382
5D8B|1|ZC|U|383
5D8B|1|ZC|U|384
5D8B|1|ZC|C|385
5D8B|1|ZC|G|386
5D8B|1|ZC|U|387
5D8B|1|ZC|G|388
5D8B|1|ZC|G|389
5D8B|1|ZC|A|390
5D8B|1|ZC|G|391
5D8B|1|ZC|C|392

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain FB

50S ribosomal protein L15

Chain RB

50S ribosomal protein L28