HL_5D8B_181

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_181 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.285

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5D8B|1|ZC|G|1171
5D8B|1|ZC|G|1173
5D8B|1|ZC|A|1174
5D8B|1|ZC|U|1175
5D8B|1|ZC|G|1176
5D8B|1|ZC|A|1177
5D8B|1|ZC|C|1178

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains