HL_5D8B_186

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5D8B|1|ZC|U|1396, 5D8B|1|ZC|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_186 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1119

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5D8B|1|ZC|G|1389
5D8B|1|ZC|U|1390
5D8B|1|ZC|U|1391
5D8B|1|ZC|A|1392
5D8B|1|ZC|A|1393
5D8B|1|ZC|U|1394
5D8B|1|ZC|A|1395
5D8B|1|ZC|U|1396
5D8B|1|ZC|U|1397
5D8B|1|ZC|C|1398

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain NB

50S ribosomal protein L23