HL_5D8B_191

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5D8B|1|ZC|A|1614, 5D8B|1|ZC|A|1616, 5D8B|1|ZC|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_191 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.105

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5D8B|1|ZC|C|1612
5D8B|1|ZC|G|1613
5D8B|1|ZC|A|1614
5D8B|1|ZC|C|1615
5D8B|1|ZC|A|1616
5D8B|1|ZC|C|1617
5D8B|1|ZC|A|1618
5D8B|1|ZC|G|1619

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain MB

50S ribosomal protein L22

Chain WB

50S ribosomal protein L34