HL_5D8B_197

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_197 not in the Motif Atlas

Homologous match to HL_7RQB_046

Geometric discrepancy: 0.0984

The information below is about HL_7RQB_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5D8B|1|ZC|C|1806
5D8B|1|ZC|G|1807
5D8B|1|ZC|U|1808
5D8B|1|ZC|A|1809
5D8B|1|ZC|A|1810
5D8B|1|ZC|G|1811

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain RB

50S ribosomal protein L28

Chain WA

50S ribosomal protein L2