HL_5D8B_198

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_198 not in the Motif Atlas

Homologous match to HL_7A0S_047

Geometric discrepancy: 0.1559

The information below is about HL_7A0S_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5D8B|1|ZC|U|1864
5D8B|1|ZC|G|1869
5D8B|1|ZC|C|1870
5D8B|1|ZC|A|1871
5D8B|1|ZC|A|1872
5D8B|1|ZC|G|1878

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains