HL_5D8B_230

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

5D8B|1|VC|A|1067, 5D8B|1|VC|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_230 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2506

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5D8B|1|VC|G|1063
5D8B|1|VC|C|1064
5D8B|1|VC|U|1065
5D8B|1|VC|U|1066
5D8B|1|VC|A|1067
5D8B|1|VC|G|1068
5D8B|1|VC|A|1069
5D8B|1|VC|A|1070
5D8B|1|VC|G|1071
5D8B|1|VC|C|1072
5D8B|1|VC|A|1073
5D8B|1|VC|G|1074
5D8B|1|VC|C|1075

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L11

Chain K

50S ribosomal protein L16

Chain T

50S ribosomal protein L25