HL_5D8B_238

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCAGCCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_238 not in the Motif Atlas

Homologous match to HL_4LFB_013

Geometric discrepancy: 0.154

The information below is about HL_4LFB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|YC|G|521
5D8B|1|YC|C|522
5D8B|1|YC|A|523
5D8B|1|YC|G|524
5D8B|1|YC|C|525
5D8B|1|YC|C|526
5D8B|1|YC|G|527
5D8B|1|YC|C|528

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain IC

30S ribosomal protein S12