HL_5D8B_249

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUAGUACGAGAGGACCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|ZC|C|2652
5D8B|1|ZC|U|2653
5D8B|1|ZC|A|2654
5D8B|1|ZC|G|2655
5D8B|1|ZC|U|2656
5D8B|1|ZC|A|2657
5D8B|1|ZC|C|2658
5D8B|1|ZC|G|2659
5D8B|1|ZC|A|2660
5D8B|1|ZC|G|2661
5D8B|1|ZC|A|2662
5D8B|1|ZC|G|2663
5D8B|1|ZC|G|2664
5D8B|1|ZC|A|2665
5D8B|1|ZC|C|2666
5D8B|1|ZC|C|2667
5D8B|1|ZC|G|2668

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L6