HL_5D8B_255

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_255 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.4505

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5D8B|1|ZC|G|2304
5D8B|1|ZC|A|2305
5D8B|1|ZC|C|2306
5D8B|1|ZC|G|2307
5D8B|1|ZC|G|2308
5D8B|1|ZC|A|2309
5D8B|1|ZC|A|2310
5D8B|1|ZC|A|2311
5D8B|1|ZC|U|2312

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain ZA

50S ribosomal protein L5